Unsaturated polyester resins, one of the most important thermosets, are invariably produced from oil-based monomers. Their application is limited in areas where high thermal stability is required due to their low Tg. Besides, these resins contain 30–40% hazardous styrene as a reactive solvent. Therefore, developing bio-based solventless unsaturated polyester resin with medium to high thermomechanical properties compared to petrochemical-based counterparts is important. In order to achieve this, a series of branched bio-based unsaturated polyester resins were synthesized using bulk polymerization method in two steps. In the first step, four different intermediates were prepared by reacting glycerol (as a core molecule) with either isosorbide (diol), 1,3-propanediol (diol), 2,5-furandicarboxylic acid (saturated diacid), or adipic acid (saturated diacid). In the second step, the branched intermediate was end capped with methacrylic anhydride to introduce reactive sites for cross-linking on the branch ends. The chemical structure of the resins was characterized by 13C-NMR. FT-IR confirmed the polycondensation reaction in the first step and the end functionalization of the resins with methacrylic anhydride in the second step. The effect of 2,5-furandicarboxylic acid and isosorbide on thermomechanical and thermal properties was investigated using dynamic mechanical analysis, differential scanning calorimetry, and thermo-gravimetric analysis. Results indicated that 2,5-furandicarboxylic acid based resins had superior thermomechanical properties compared to a commercial reference unsaturated polyester resin, making them promising resins for high-temperature composite applications. For example, the resin based on 2,5-furandicarboxylic acid and isosorbide and the resin based on 2,5-furandicarboxylic acid and 1,3-propanediol gave glass transition temperatures of 173 °C and 148 °C, respectively. Although the synthesized 2,5-furandicarboxylic acid based resins had higher viscosity (22.7 Pas) than conventional unsaturated polyester (0.4–0.5 Pas) at room temperature, preheated resins can be used for making high-temperature-tolerance fiber-reinforced composite.